miRTarCLIP
miRTarCLIP, a systematic approach for mining miRNA-target sites from CLIP-Seq and PAR-CLIP sequencing data, and integrated the workflow with a graphical web-based browser, which provides a user friendly interface and detailed annotations of MTIs. We also showed through real-life examples that miRTarCLIP is a powerful tool for understanding miRNAs. Our integrated tool can be accessed online free.
Download Package
miRTarCLIP needs to execute in x86 Linux 32 or 64 bit system. See Tutorial. The current source code version 1.0.1: miRTarCLIP_Linux_x32 or miRTarCLIP_Linux_x64
Recent news
» 1.0.1 release - 2013.11.30 x32 x64
✧ Update miRTarBase version to 4.0
✧ Update bowtie version to 1.0.0
» 1.0.0 release - 2012.8.15 x32 x64
Citing miRTarCLIP
C.H. Chou, F.M. Lin, M.T. Chou, S.D. Hsu, T.H. Chang, S.L. Weng, S. Shrestha, C.C. Hsiao, J.H. Hung* and H.D. Huang* (2013) A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing" BMC Genomics [PubMed] [Link]
Computional Protocol
Current Version
- » Release 1.0.1 at 2013.11.30
Download
- » Linux x32: miRTarCLIP_x32
- » Linux x64: miRTarCLIP_x64
Quick Start
Examples
Data Set
Related Links
- » miRTarBase: Valided MTIs
- » miRBase: miRNA database
- » TargetScan: Predicted MTIs
Development Plants and Sponsors
- » Developed by ISBLab Research Group
- » Funded by National Science Council
- » Funded by National Chiao Tung University