miRTarCLIP, a systematic approach for mining miRNA-target sites from CLIP-Seq and PAR-CLIP sequencing data, and integrated the workflow with a graphical web-based browser, which provides a user friendly interface and detailed annotations of MTIs. We also showed through real-life examples that miRTarCLIP is a powerful tool for understanding miRNAs. Our integrated tool can be accessed online free.

Download Package

miRTarCLIP needs to execute in x86 Linux 32 or 64 bit system. See Tutorial. The current source code version 1.0.1: miRTarCLIP_Linux_x32 or miRTarCLIP_Linux_x64

Recent news

» 1.0.1 release - 2013.11.30 x32  x64
  ✧ Update miRTarBase version to 4.0
  ✧ Update bowtie version to 1.0.0

» 1.0.0 release - 2012.8.15 x32  x64

Citing miRTarCLIP

C.H. Chou, F.M. Lin, M.T. Chou, S.D. Hsu, T.H. Chang, S.L. Weng, S. Shrestha, C.C. Hsiao, J.H. Hung* and H.D. Huang* (2013) A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing" BMC Genomics [PubMed] [Link]

Computional Protocol

Current Version

  • » Release 1.0.1 at 2013.11.30


Quick Start


Data Set

Related Links

Development Plants and Sponsors